The Blueberry Lemon Poppy Seed Sourdough Muffins recipe brings together bakery-style domes, a moist and tender crumb, bright citrus, crunchy poppy seeds, and juicy bursts of blueberries—plus a gentle tang from sourdough discard that keeps every bite interesting. In one bowl you’ll whisk a lemony batter with sour cream and discard for moisture and lift; in another you’ll toss together a quick, buttery crumble. Bake hot for those coveted muffin tops, then finish with a zesty lemon glaze. The result is a tray of golden, fragrant muffins that look straight out of a pastry case and taste even better.
Why You’ll Love These Blueberry Lemon Poppy Seed Sourdough Muffins
- Bakery texture at home: A high initial bake temperature encourages rapid oven spring for tall, rounded crowns.
- Moist, tender crumb: Sour cream plus sourdough discard add richness and a subtle tang without heaviness.
- Bright citrus & bursts of berries: Lemon zest rubbed into sugar + fresh lemon juice + lots of blueberries = balanced, sunny flavor.
- Delightful crunch: Poppy seeds inside and a crisp buttery crumble on top give contrast to the soft interior.
- Great way to use discard: Put your sourdough routine to work in a sweet bake—no long fermentation required.
- Freezer friendly: Glazed or unglazed, these muffins store beautifully for quick breakfasts and snacks.
What Is Blueberry Lemon Poppy Seed Sourdough Muffins?
Blueberry Lemon Poppy Seed Sourdough Muffins are classic bakery-style muffins enriched with sourdough starter discard—the portion of starter you’d normally set aside during feedings. In batters like this, discard behaves like a tangy, mild acid and moisture source, helping with tenderness and depth of flavor (think delicate lemon-buttermilk vibes, but with a fragrant sourdough undertone). The formula layers lemon zest and lemon juice for brightness, poppy seeds for pleasant crunch, and blueberries for juicy pockets and color. A quick crumble topping adds texture, while a light lemon glaze amplifies the citrus aroma and sheen. No lengthy fermentation is needed; the bake relies on chemical leaveners for rise, with discard there for flavor, moisture, and a touch of tenderness.
Blueberry Lemon Poppy Seed Sourdough Muffins
Ingredients
Dry Ingredients (Batter)
- 2.5 cups all-purpose flour
- 2 tsp baking powder
- 0.5 tsp baking soda
- 0.5 tsp fine sea salt
- 1.5 tbsp poppy seeds
Lemon Sugar & Wet Ingredients (Batter)
- 1 cup granulated sugar
- 2 tsp lemon zest from 2 large lemons
- 0.66 cup sour cream or thick Greek yogurt
- 0.5 cup sourdough discard unfed
- 0.5 cup unsalted butter, melted and cooled
- 2 large eggs room temperature
- 2 tbsp fresh lemon juice
- 1.5 tsp vanilla extract
- 1.5 cups blueberries fresh or frozen
Crumble Topping
- 0.33 cup granulated sugar
- 2 tbsp brown sugar
- 0.5 cup all-purpose flour
- 0.25 tsp ground cinnamon optional
- 1 pinch fine sea salt
- 4 tbsp cold unsalted butter, cubed
Lemon Glaze
- 1 cup powdered sugar, sifted
- 2.5 tbsp fresh lemon juice adjust for desired consistency
- 1 pinch fine sea salt balances sweetness
Instructions
- Step 1 – Heat the oven and prep pans: Preheat to 425°F (220°C) and line 2 muffin pans with liners or grease lightly.
- Step 2 – Make the crumble: Mix sugars, flour, cinnamon, and salt. Cut in butter until crumbly. Chill.
- Step 3 – Whisk dry ingredients: In a large bowl, combine flour, baking powder, baking soda, salt, and poppy seeds.
- Step 4 – Make lemon sugar and wet mix: Rub lemon zest into sugar. Whisk in sour cream, discard, butter, eggs, lemon juice, and vanilla.
- Step 5 – Combine batter and add blueberries: Fold wet into dry just until combined. Fold in berries gently.
- Step 6 – Portion and top: Divide batter into muffin cups ¾ full. Top generously with crumble.
- Step 7 – Bake: Bake at 425°F (220°C) for 14–15 minutes until golden and springy. Rotate pans if needed.
- Step 8 – Cool and glaze: Cool 5 minutes in pan, then on rack. Drizzle with lemon glaze while still warm.
Notes

Ingredients for Blueberry Lemon Poppy Seed Sourdough Muffins
Dry Ingredients (Batter)
- 2½ cups (300 g) all-purpose flour
- 2 tsp baking powder
- ½ tsp baking soda
- ½ tsp fine sea salt
- 1½ Tbsp poppy seeds
Lemon Sugar & Wet Ingredients (Batter)
- 1 cup (200 g) granulated sugar
- Zest of 2 large lemons (about 2 packed tsp)
- ⅔ cup (160 g) sour cream (or thick Greek yogurt)
- ½ cup (120 g) sourdough discard, unfed
- ½ cup (113 g) unsalted butter, melted and slightly cooled
- 2 large eggs, room temperature
- 2 Tbsp fresh lemon juice
- 1½ tsp vanilla extract
- 1½–2 cups blueberries (fresh or frozen; see notes)
Crumble Topping
- ⅓ cup (67 g) granulated sugar
- 2 Tbsp (25 g) brown sugar
- ½ cup (60 g) all-purpose flour
- ¼ tsp ground cinnamon (optional)
- Pinch fine sea salt
- 4 Tbsp (57 g) cold unsalted butter, cut into cubes
Lemon Glaze
- 1 cup (120 g) powdered sugar, sifted
- 2–3 Tbsp fresh lemon juice (to desired drizzle consistency)
- Pinch fine sea salt (balances sweetness)
Yield: 24 standard muffins (or 12 jumbo; adjust time).
Ingredient Notes (Substitutions & Smart Tips)
- Sourdough discard: Any hydration works. If extremely liquid, reduce lemon juice by ½ Tbsp; if very thick, add a tsp of milk if the batter seems tight. Discard should smell fresh and mildly tangy—avoid anything harsh or over-acidic.
- Sour cream vs. Greek yogurt: Both provide lovely moisture; full-fat gives the plushest crumb.
- Butter: Melted butter brings flavor and a tender bite. You may use neutral oil for an ultra-moist, slightly softer texture.
- Blueberries: Fresh hold shape best. If using frozen, do not thaw; toss lightly in 1 tsp flour to reduce streaking, and add 1–2 minutes to bake time if needed.
- Lemon intensity: For extra zing, add ½ tsp pure lemon extract in addition to zest and juice, or finish with a whisper of lemon zest over the glaze.
- Poppy seeds: Freshness matters—old poppy seeds taste flat. Keep them sealed and cool; buy in small quantities.
- Gluten-aware path: A good 1:1 gluten-free flour can work; expect a softer dome and slightly different crumb. Let batter rest 10 minutes before portioning to hydrate the blend.

Step-by-Step Instructions
Step 1 – Heat the oven and prep pans
Preheat to 425°F (220°C) with a rack in the center. Line two 12-cup muffin pans with paper liners (or lightly grease). This high initial heat helps build domes; you’ll keep it for the entire bake in this formula.
Step 2 – Make the crumble
In a small bowl, mix granulated sugar, brown sugar, flour, cinnamon (if using), and salt. Cut in cold butter with a pastry blender or fingertips until pea-sized clumps form. Chill while you make the batter so it stays chunky.
Step 3 – Whisk dry ingredients
In a large bowl, whisk flour, baking powder, baking soda, salt, and poppy seeds until evenly combined. Set aside.
Step 4 – Build lemon sugar and wet mixture
In a separate large bowl, combine granulated sugar and lemon zest. Rub with fingertips for 30–60 seconds until the sugar looks slightly damp and fragrant (zest oils will perfume the sugar—this is a big flavor boost). Whisk in sour cream, sourdough discard, melted butter, eggs, lemon juice, and vanilla until smooth.
Step 5 – Combine batter and add berries
Pour the wet mixture into the dry. Use a silicone spatula to fold just until you see no dry pockets; the batter should be thick and scoopable. Gently fold in blueberries with as few strokes as possible to avoid streaking and toughening the crumb. Overmixing = tunneling and tough muffins, so aim for streak-free but still slightly lumpy batter.
Step 6 – Portion and top
Divide batter among the prepared cups, filling each about ¾ full (a level #16 scoop works well). Sprinkle a generous spoonful of crumble over each muffin, pressing very lightly so it adheres.
Step 7 – Bake
Bake at 425°F (220°C) for 14–15 minutes, rotating pans once halfway if your oven bakes unevenly. Muffins are done when the tops are set and lightly golden, a toothpick inserted at the edge comes out clean (avoiding blueberry pockets), and the centers spring back to a gentle touch.
Step 8 – Cool and glaze
Cool in pans 5 minutes, then transfer to a rack. Whisk powdered sugar with lemon juice and a pinch of salt to a pourable glaze. Drizzle over warm (not hot) muffins so it sets quickly with a pretty sheen.
Pro Tips for Success
- Zest + sugar rub = maximum lemon: Don’t skip this hands-on step—rubbing zest releases oils for notably brighter flavor.
- Room-temperature eggs & dairy: They incorporate more smoothly for an even crumb.
- Mind the mix: Fold batter gently; a few small lumps are fine. Overmixing knocks out air and toughens the crumb.
- High-heat bake: Starting—and staying—at 425°F delivers bold tops and fast set, keeping blueberries floating throughout the muffin instead of sinking.
- Chilled crumble: Cold butter chunks hold their shape and bake up crunchy.
- Blueberry insurance: Toss frozen berries in a teaspoon of flour; fold in quickly to limit streaking.
- Glaze timing: Drizzle when muffins are warm so the glaze sets with light translucence; too hot and it vanishes, too cool and it won’t adhere.
Flavor Variations
- Meyer Lemon & Lavender: Swap standard zest for Meyer lemon and add ¼ tsp culinary lavender, finely crushed, to the dry ingredients.
- Triple Citrus: Mix in orange and lime zests (½ tsp each) with lemon for a sunny citrus medley.
- Almond Crunch: Replace vanilla with ½ tsp almond extract; sprinkle sliced almonds under the crumble.
- Lemon–White Chocolate: Fold in ¾ cup white chocolate chips with the blueberries for a dessert-leaning muffin.
- Streusel-Only Classic: Skip the glaze and double the crumble for an extra-crunch top (bake 1–2 minutes longer).
- Lemon Chia Swap: Replace poppy seeds with 1 Tbsp chia seeds for a slightly different crunch and extra body.
Serving Suggestions
- Brunch platter: Serve warm with a bowl of yogurt and a drizzle of honey, plus fresh berries on the side.
- Coffee break: Pair with hot tea or coffee; the lemon glaze perfumes the steam as you sip.
- Make it a dessert: Warm 10 seconds and plate with a scoop of vanilla-bean ice cream and extra lemon zest.
- Lunchbox treat: Glaze lightly so it sets firm; they travel well and taste great at room temp.
Storage and Freezing Instructions
- Room temperature: Store fully cooled, glazed muffins in an airtight container up to 2 days. Slip a paper towel beneath and above the muffins to absorb moisture and preserve crumble texture.
- Refrigerator: For longer storage (3–4 days), refrigerate; warm 10–15 seconds before serving to reawaken aroma.
- Freeze: Arrange cooled muffins on a sheet pan and freeze solid, then bag airtight for up to 2 months. Thaw at room temp (about 45 minutes) or microwave 15–20 seconds. If glazing later, freeze unglazed, thaw, and glaze before serving.
Nutrition Facts (Per Muffin)
Estimated for 24 muffins, including crumble and a light glaze. Actual values vary by ingredient brands and blueberry quantity.
| Calories | Protein (g) | Carbs (g) | Fat (g) | Fiber (g) | Sodium (mg) |
|---|---|---|---|---|---|
| 215 | 3 | 33 | 8 | 1 | 170 |
FAQ About Blueberry Lemon Poppy Seed Sourdough Muffins
Can I use active sourdough starter instead of discard?
Yes—use the same weight as discard. If your starter is very bubbly and thin, reduce the lemon juice by ½ Tbsp or add a teaspoon of flour to keep batter thickness similar.
My muffins didn’t dome—what went wrong?
Likely causes: oven not fully preheated, old baking powder/soda, or overmixed batter. Next time, preheat 15–20 minutes, verify your leaveners (they should fizz in warm water), and fold gently until just combined.
How do I prevent blueberries from sinking?
A thicker batter + hot oven help. If using frozen berries, add straight from the freezer and toss in a teaspoon of flour before folding in. Don’t overmix after adding berries.
Can I reduce sugar?
You can reduce granulated sugar in the batter by up to 20% without major texture issues. Keep the crumble and glaze as written if you still want that bakery-style finish and contrast.
Can I make jumbo muffins or minis?
Yes. For jumbo (6-count tin), bake 22–26 minutes. For mini muffins, bake 9–12 minutes at 400°F (205°C) with a thinner smear of crumble. Check early; smaller sizes brown fast.
Do I have to glaze them?
No; they’re great with just crumble. The glaze adds a burst of citrus and a pretty sheen—ideal for brunch or gifting.
Can I make the batter ahead?
It’s best baked immediately. If you must pause, refrigerate batter up to 1 hour. For longer lead time, prep the dry mix and lemon sugar ahead; whisk wet ingredients right before baking.
TastyInspo Notes
- Citrus perfume hack: Zest directly over the mixing bowl so oils fall into the sugar; rub until the sugar smells like bright lemon candy.
- Two-bowl rhythm: Mix crumble first and chill; then make batter. That little head start keeps streusel chunky and crisp through the bake.
- Scoop for symmetry: A cookie scoop gives even portions and consistent rise—your dozen look bakery-tidy.
- Warm glaze, warm muffin: Drizzling while muffins are warm helps the glaze set into a thin, glossy veil instead of pooling.
- Quick refresh: Day-old muffin? Ten seconds in the microwave brings back blueberry juiciness and lemon aroma.
Final Thoughts
Blueberry Lemon Poppy Seed Sourdough Muffins are everything we want from a home bake: tall, golden crowns; plush, lemon-perfumed crumb; a sprinkle of poppy crunch; and juicy blueberry pockets in every bite. Sourdough discard doesn’t just rescue leftovers—it actively improves texture and flavor, adding gentle tang and tenderness to a bakery-worthy muffin. Master the simple flow—rub zest into sugar, fold batter gently, chill the crumble, and glaze while warm—and you’ll have a repeatable, crowd-pleasing recipe ready for brunch tables, lunchboxes, and make-ahead breakfasts all year long.






